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研究生: 馬帝亞
De Vivo, Mattia
論文名稱: 鐵線蟲的研究:臺灣索鐵線蟲 (線形動物門) 的分佈模型、族群遺傳學與其附生生物
De Nematomorpho investigatio: distribution modeling, population genetics and also epibionts of Chordodes formosanus (Phylum Nematomorpha)
指導教授: 黃仁磐
Huang, Jen-Pan
口試委員: 蔡怡陞
Tsai, Isheng Jason
端木茂寗
Tuanmu, Mao-Ning
邱名鍾
Chiu, Ming-Chung
鄭任鈞
Cheng, Ren-Chung
黃仁磐
Huang, Jen-Pan
口試日期: 2023/07/25
學位類別: 博士
Doctor
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2023
畢業學年度: 111
語文別: 英文
論文頁數: 152
英文關鍵詞: Nematomorpha, Chordodes formosanus, distribution modeling, population genetics, ecology
研究方法: 實驗設計法次級資料分析田野調查法
DOI URL: http://doi.org/10.6345/NTNU202301114
論文種類: 學術論文
相關次數: 點閱:160下載:7
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  • The phylum Nematomorpha (commonly known as “horsehair worms” in English and “鐵線蟲” in Taiwan) is known for being one of the most understudied animal groups, especially from what concerns molecular ecology. This is often justified by the fact they do not infect humans or animals related to anthropic activities, although they became famous from popular science perspective due to the fact they seem to induce their arthropod hosts to jump into freshwater. Given our own low knowledge on them, I decided to apply tools that are usually used to work on non-model organisms for filling some gaps.
    More precisely, I focused on Chordodes formosanus, which is widely regarded as the most common horsehair worm species in Taiwan. I checked the species’ distribution compared to the ones of its hosts (three Mantodea species) and its population genetics through two different kinds of data (a fragment of the mitochondrial cytochrome c oxidase subunit 1, also known as COXI, and double digest restriction-site associated DNA sequencing, ddRADseq).
    For the second part (Chapter 2), my ENMEval models show how hosts and parasite have high distribution overlap, although different metrics can lead to different niche overlap estimation. Furthermore, there are suitable modeled areas for C. formosanus in which it has not been reported yet; this raises concerns for possible extirpation or sampling bias.
    For what concerns the second part (which is reported in Chapter 3), both my COXI and ddRADseq dataset tends to consider C. formosanus as a single species, without any population structure based on geography alone in its known Taiwanese range (and, in the case of COXI, whole known range). This is interesting, because non-flying organisms dependent on freshwater usually have dispersal issues in Taiwan, given the orology of the island. Furthermore, calculations of the effective population size (Ne) trends show how the species is decreasing in number of individuals; this is surprising, since it is the most common Nematomorpha taxon in the island, although its numbers are still pretty high. These last results might be congruent with the distribution modeling and may show signs of extirpation in some areas with cultivated land.
    Additionally, in Chapter 4 I reported for the first time sac fungi (Division Ascomicota) living on hairworms; more specifically, I collected Colletotrichum fructicola, usually a plant pathogen, growing on the cuticle of living C. formosanus specimens.
    My research increased the knowledge on several aspects about Nematomorpha and also laid the foundation for possible protocols to follow for checking on parasites’ distribution and conservation status, which are needed given the fact parasite conservation is a recent conservation sub-field that still needs to have standardized methods.

    Table of Contents Acknowledgements ............................................................................................. i Abstract ............................................................................................................. iii Table of Contents ............................................................................................... v List of Tables ................................................................................................... viii List of Figures ................................................................................................... ix Chapter 1: Introduction .................................................................................... 1 1.1 A short and general introduction to the phylum Nematomorpha ....... 1 1.2 The Taiwanese hairworms: 鐵線蟲......................................................... 3 1.3 Lacks in hairworm research .................................................................... 7 1.4 The thesis's focus .................................................................................... 10 1.5 Figures ..................................................................................................... 13 Chapter 2: Species Distribution Modeling (SDM) of Chordodes formosanus, with consideration of niche overlap with its mantis hosts............................ 15 2.0 Abstract ................................................................................................... 16 2.1 Introduction ............................................................................................ 18 2.2 Materials and methods ........................................................................... 21 2.2.1 Presence points ................................................................................. 21 2.2.2 Environmental variables .................................................................. 23 2.2.3 Species Distribution Models ............................................................ 23 2.2.4 Model evaluation and selection ....................................................... 25 2.2.5 Binary maps ...................................................................................... 26 2.2.6 Niche overlap .................................................................................... 27 2.2.7 Data availability ................................................................................ 28 2.3 Results ...................................................................................................... 28 2.3.1 Species distribution models and binary maps ............................... 28 2.3.2 Niche overlap .................................................................................... 29 2.4 Discussion ................................................................................................ 29 2.4.1 Species distribution models and binary maps ............................... 29 2.4.2 Niche overlap .................................................................................... 31 2.4.3 Ecological and modeling implications ............................................ 34 2.5 Conclusions.............................................................................................. 36 2.6 Tables ....................................................................................................... 38 2.7 Figures ..................................................................................................... 39 Chapter 3: Population genetics and demographics of Taiwanese gordiids 42 3.0 Abstract ................................................................................................... 43 3.1 Introduction ............................................................................................ 45 3.2 Materials and methods ........................................................................... 47 3.2.1 Sampling ............................................................................................ 47 3.2.2 DNA extraction, COXI amplification and ddRADseq protocol ... 48 3.2.3 COXI analyses .................................................................................. 49 3.2.4 ddRADseq analyses .......................................................................... 51 3.2.5 Data availability ................................................................................ 54 3.3 Results ...................................................................................................... 55 3.3.1 COXI analyses .................................................................................. 55 3.3.2 ddRADseq analyses .......................................................................... 56 3.4 Discussion ................................................................................................ 57 3.4.1 COXI diversity analyses .................................................................. 57 3.4.2 ddRADseq diversity analyses for Chordodes formosanus ............. 60 3.4.3 Demographic history inferences ...................................................... 60 3.5 Conclusions.............................................................................................. 62 3.6 Figures ..................................................................................................... 65 Chapter 4: First report of Colletotrichum fructicola (Division Ascomycota) on horsehair worms ......................................................................................... 71 4.0 Abstract ................................................................................................... 72 4.1 Introduction ............................................................................................ 73 4.2 Materials and methods ........................................................................... 73 4.2.1 Affected individuals .......................................................................... 73 4.2.2 Morphological fungal investigation ................................................ 74 4.2.3 Molecular fungal investigation ........................................................ 74 4.3 Results ...................................................................................................... 76 4.4 Discussion and Conclusions ................................................................... 77 4.5 Tables ....................................................................................................... 79 4.6 Figures ..................................................................................................... 81 Chapter 5: Conclusions ................................................................................... 85 5.1 The role of land-change use in shaping hairworms' distribution and viability .......................................................................................................... 85 5.2 The role of hosts in shaping hairworms' distribution and potential future directions on such matter ................................................................. 86 5.3 Future directions in hairworms' studies .............................................. 88 References ......................................................................................................... 92 Appendices...................................................................................................... 133 Supplementary Tables for Chapter 2 ....................................................... 133 Supplementary Figures for Chapter 2 ...................................................... 135 Supplementary Tables for Chapter 3 ....................................................... 138 Supplementary Figures for Chapter 3 ...................................................... 149

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