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研究生: 陳梅珍
Mei-jane Chen
論文名稱: 台灣網柱細胞黏菌屬分子類緣關係研究
Studies of phylogenetic analysis of Dictyostelium Brefeld in Taiwan
指導教授: 葉增勇
Yeh, Zeng-Yung
學位類別: 碩士
Master
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2004
畢業學年度: 92
語文別: 中文
論文頁數: 74
中文關鍵詞: 網柱細胞黏菌分子類緣關係細胞黏菌
英文關鍵詞: Dictyostelium, phylogenetic analysis
論文種類: 學術論文
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  • 選取台灣產的網柱細胞黏菌屬(Dictyostelium)純培養菌株,分別為布列菲氏網柱細胞黏菌(Dictyostelium brefeldianum Hagiwara)、棍棒頭網柱細胞黏菌(D. clavatum Hagiwara)、纖細網柱細胞黏菌(D. delicatum Hagiwara)、微小型網柱細胞黏菌(D. exigumm Hagiwara)、細小網柱細胞黏菌(D. minutum Raper)、巨網柱細胞黏菌(D. giganteum Singh)和紫色網柱細胞黏菌(D. purpureum Olive ) 共七種,另和日本學者所贈與之日本地區六種網柱細胞黏菌為實驗材料,分別從這些菌株抽取出Genomic DNA,並利用聚合酶連鎖反應法及適當引子,大幅得到網柱細胞黏菌的核醣體DNA (rDNA)之內部轉錄間隔區(ITS)及5.8S(ITS1-5.8S-ITS2)核酸序列。將各菌株之核酸序列進行分析,並引用GenBank所登錄之七種網柱細胞黏菌rDNA核酸序列,經排序(alignment)後,再以MEGA 2、PAUP 4.0等軟體,繪出演化樹狀圖。結果顯示網柱細胞黏菌屬具有極粒(polar granule)孢子和不具有極粒孢子之兩群物種,可區分出來。另以5.8S核酸序列分析網柱細胞黏菌和其他生物之間的親緣關係,顯示網柱細胞黏菌與原生生物界親緣關係較接近,而與動物界、植物界、和真菌界親緣關係較遠。

    Seven dictyostelid isolates from Taiwan, namely: Dictyostelium brefeldianum Hagiwara, D. clavatum Hagiwara, D. delicatum Hagiwara, D. exigumm Hagiwara, D. minutum Raper, D. giganteum Singh, and D. purpureum Olive together with six reference strains from Japan were used in this study. Genomic DNA were extracted from pure cultures, then the ITS and 5.8S nuclear ribosomal DNA (rDNA) were amplified by polymerase chain reaction (PCR) with two pairs of designed primers. The rDNA sequences of tested isolates were analysis with seven rDNA sequences of Dictyostelium registered in NCBI. Sequences were aligned by Clustal X, and the phylogenetic relationship tree was constructed by MEGA 2 and PAUP 4.0 software. The results were shown as follows: Dictyostelids with or without polar granules can be divided into two groups and phyologenetic analysis of 5.8S rDNA sequence, Dictyostelium species were closely related with Kingdom Protista, but far away from Kingdom Animalia, Plantae, and Fungi.

    中文摘要…………………………………………………… Ⅴ 英文摘要…………………………………………………… Ⅵ 壹、前言‥…‥…‥…‥…‥…‥…‥…‥…‥…‥… 1 貳、前人研究‥…‥…‥…‥…‥…‥…‥…‥…‥… 8 參、材料與方法‥…‥…‥…‥…‥…‥…‥…‥…‥12 1.菌株來源‥…‥…‥…‥…‥…‥…‥…‥…‥… 12 2.細胞黏菌基因體DNA (Genomic DNA)之萃取……………12 3.基因體DNA (Genomic DNA) 之檢測……………………13 (1)水平式洋菜膠片電泳分析…………………………… 14 (2)核酸分光光度計(RNA/DNA calculator)…………… 15 4.聚合酶連鎖反應 (Polymerase chain reaction,PCR)和其產物之檢測…………………………………………………15 (1) PCR增幅反應……………………………………… 16 (2) PCR產物之檢測…………………………………… 16 5.自動去氧核醣核酸定序儀(Automated DNA sequencer)……17 6.核酸序列分析(DNA sequence analysis)…………… 17 (1)序列排序………………………………………… 17 (2)親緣關係樹之建立…………………………………19 肆、結果…………………………………………………22 1. PCR增幅反應……………………………………… 22 2.序列比對與相關序列之搜尋………………………… 22 3.網柱細胞黏菌rDNA-ITS核酸序列之排序…………… 23 4.遺傳距離(Genetic distance)………………………… 24 5.親緣關係樹 (phylogenetics tree)之建構……………… 24 伍、討論…………………………………………………26 陸、參考文獻……………………………………………33 柒、附表…………………………………………………43 捌、附圖…………………………………………………58 玖、附錄…………………………………………………65  附錄一、培養基的製備  附錄二、具有極粒和無極粒網柱細胞黏菌之孢子圖版

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