研究生: |
李昱 Lee, Yu |
---|---|
論文名稱: |
外來龜種對金門地區原生金龜的遺傳入侵 Genetic introgression from invasive Mauremy species to native M. reevesii in Kinmen |
指導教授: |
林思民
Lin, Si-Min |
學位類別: |
碩士 Master |
系所名稱: |
生命科學系 Department of Life Science |
論文出版年: | 2015 |
畢業學年度: | 103 |
語文別: | 中文 |
論文頁數: | 45 |
中文關鍵詞: | 金龜 、金門 、停戰區 、遺傳入侵 、野生動物貿易 |
英文關鍵詞: | Mauremys reevesii, Kinmen, demilitarized zone, genetic introgression, wildlife trade |
論文種類: | 學術論文 |
相關次數: | 點閱:90 下載:16 |
分享至: |
查詢本校圖書館目錄 查詢臺灣博碩士論文知識加值系統 勘誤回報 |
金門是金龜(Mauremys reevesii)在台灣唯一擁有穩定族群的棲地,金龜也是島上除了中華鱉之外最優勢的原生龜種。然而隨著寵物貿易的流通,也可能對當地的龜鱉類群聚產生相當程度的改變。我們在金門島上2011至2013年進行金門的淡水龜普查中,不僅發現了過去在當地較為罕見的斑龜(M. sinensis),還觀察到疑似金龜與斑龜、金龜與柴棺龜雜交的個體。這些疑似雜交的表形顯示在生殖隔離不完全的情形下,不同種的淡水龜可能發生雜交的現象。若雜交的後代仍具有生殖能力,這些近緣龜種可能會對金龜產生遺傳入侵(genetic introgression)的負面效應。為了瞭解斑龜與柴棺龜是否會與原生的金龜雜交,並評估遺傳滲入的嚴重程度,找出影響池塘雜交程度的因子,我們採用淡水龜的表形、粒線體cytochrome b基因序列、與13組微衛星基因座進行遺傳滲入的檢測,並用池塘的環境資料:距主要道路距離(DM)、距次要道路距離(DS)、植被覆蓋程度(VL)、池塘水面上植物量(VW)、池塘邊緣形式(PS)、池塘面積大小(PA)、池塘深度(PD)以及池塘內斑龜的數量等因子,利用廣義線性迴歸分析(general linear regression)檢視上述各項棲地因子是否對金龜的雜交程度造成影響。結果顯示金門的金龜確實會與斑龜和柴棺龜雜交。從粒線體基因與表形的比較結果來看,表形與基因型不一致的金龜共有10隻,其中有6隻金龜帶有斑龜的基因型;有4隻帶有柴棺龜的基因型。利用微衛星基因座,並使用STRUCTURE分群判別,在全部使用純系龜隻的情況下,三種淡水龜可以清晰的分群,最佳分群數為三。但是當加入金門當地的金龜之後,最佳分群數為二。表形初步判定為雜交的19隻淡水龜,有18隻確認為斑龜或柴棺龜和金龜的雜交龜。而表形看似金龜的241隻個體當中,有28隻遭到斑龜或柴棺龜的遺傳入侵。總和來說,原生金龜有高達11.6%的比例與近緣龜種雜交。採樣的44個樣點裡有22個樣點採集到金龜,而其中有16個水域(72.7%)有雜交的現象產生。影響池塘雜交的程度則與共域的外來斑龜數量與池塘的人工化程度有關,斑龜的數量與池塘雜交的程度呈現顯著的正相關(P=0.0002),天然的池塘受到遺傳入侵的程度也顯著地低於人工池塘(P=0.037)。研究顯示這三種已經分化的淡水龜若受到人類行為的干擾(例如異種共同圈養,或是人為進行的釋放),很可能會提升種間雜交的機會,對物種的保育有不利的影響。
Kinmen Archipelago, comprising Greater and Lesser Kinmen islands, is located on the coastline of China and sustaining a stable population of Chinese pond turtle (Mauremys reevesii). Since this turtle is widely consumed for food and medical purposes, Kinmen has become one of the most important natural habitats for the conservation of this species in Taiwan. However, community of turtles in Kinmen Islands might have changed in recent years because of human activities. Chinese stripe-necked turtle (M.sinensis), which was extremely rare in literature, was found on the islands; while genetic introgression was suspected from M. sinensis and the even rarer Asian brown pond turtle (M. mutica). In this study, we aim to evaluate the level and magnitude of genetic introgression among closely related turtles by using mitochondrial cytochrome b sequences and 13 microsatellite loci. We further used 8 environmental and biological factors of the ponds to conduct general linear regression in order to figure out the critical factors which influence the hybrid rates of the turtles. Our results indicated strong evidences for the hybridization between M. reevesii and M. sinensis, and occasionally between M. reevesii and M. mutica. Six turtles showed inconsistence between their M. reevesii morphology but M. sinensis mitochondrial haplotypes; while 4 others showed M.reevesii morphology but M. multica haplotypes. Microsatellite genotyping further revealed 18 among 19 turtles with intermediate form and 28 among 241 M.reevesii individuals confirmed as hybrids between M.reevesii and M. sinensis or M . mutica. Among the 44 water bodies we sampled, 22 localities have M. reevesii records and 16 (72.7%) have hybrids detected. The degree of introgression in a pond is positively correlated to the abundance of M. sinensis (P = 0.0223) and the artificial modification of the pond (P = 0.0002). Our research shows that human mediated dispersal of Mauremys and destruction of natural habitats may increase the possibility of interspecies hybridization, and cause negative impact to the endangered species.
Blacket, M. J., C. Robin, R. T. Good, S. F. Lee and A. D. Miller (2012). "Universal primers for fluorescent labelling of PCR fragments--an efficient and cost-effective approach to genotyping by fluorescence." Molecular Ecology Resource 12(3): 456-463.
Barth, D., D. Bernhard, D. Guicking, M. Stock and U. Fritz (2002). "Is Chinemys megalocephala Fang, 1934 a valid species? New insights based on mitochondrial DNA sequence data." SALAMANDRA-BONN- 38(4): 233-244.
Buskirk, J. R., J. F. Parham and C. R. Feldman (2005). "On the hybridisation between two distantly related Asian turtles (Testudines: Sacalia x Mauremys)." SALAMANDRA-BONN- 41(1/2): 21.
Cagle, F. R. (1939). "A system of marking turtles for future identification." Copeia 1939(3): 170-173.
Chang, C.-M. (2005). "The analysis on the water resource development strategy in Kinmen-A viewpoint of public value." National Sun Yat-sen University Thesis, Kaohsiung, Taiwan.
Chen, T.-H. and K.-Y. Lue (2010). "Population status and distribution of freshwater turtles in Taiwan." Oryx 44(02): 261-266.
Earl, D. A. (2012). "STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method." Conservation Genetics Resources 4(2): 359-361.
Fong, J. J. and T.-H. Chen (2010). "DNA evidence for the hybridization of wild turtles in Taiwan: possible genetic pollution from trade animals." Conservation Genetics 11(5): 2061-2066.
Fritz, U., D. Ayaz, J. Buschbom, H. Kami, L. Mazanaeva, A. Aloufi, M. Auer, L. Rifai, T. Šilić and A. Hundsdörfer (2008). "Go east: phylogeographies of Mauremys caspica and M. rivulata–discordance of morphology, mitochondrial and nuclear genomic markers and rare hybridization." Journal of Evolutionary Biology 21(2): 527-540.
Fujii, R., H. Ota and M. Toda (2014). "Genetic and Morphological Assessments of Hybridization Between Two Non-Native Geoemydid Turtles, Mauremys reevesii and Mauremys mutica, in Northcentral Japan." Chelonian Conservation and Biology 13(2): 191-201.
Garrick, R. C., E. Benavides, M. A. Russello, J. P. Gibbs, N. Poulakakis, K. B. Dion, C. Hyseni, B. Kajdacsi, L. Marquez, S. Bahan, C. Ciofi, W. Tapia and A. Caccone (2012). "Genetic rediscovery of an 'extinct' Galapagos giant tortoise species." Current Biology 22(1): R10-11.
Gillespie, G. D. (1985). "Hybridization, introgression, and morphometric differentiation between Mallard (Anas platyrhynchos) and Grey Duck (Anas superciliosa) in Otago, New Zealand." The Auk 102(3) : 459-469.
Guillon, J.-M., L. Guéry, V. Hulin and M. Girondot (2012). "A large phylogeny of turtles (Testudines) using molecular data." Contributions to Zoology 81(3): 147-158.
Haitao, S., J. F. Parham, F. Zhiyong, H. Meiling and Y. Feng (2008). "Evidence for the massive scale of turtle farming in China." Oryx 42(01): 147-150.
Haskell, A. and M. Pokras (1994). "Nonlethal blood and muscle tissue collection from redbelly turtles for genetic studies." Herpetological Review 25(1): 11-11.
Hasselman, D. J., E. E. Argo, M. C. McBride, P. Bentzen, T. F. Schultz, A. A. Perez-Umphrey and E. P. Palkovacs (2014). "Human disturbance causes the formation of a hybrid swarm between two naturally sympatric fish species." Molecular Ecology 23(5): 1137-1152.
He, G., L. He, C.-l. Fang, Y.-F. Xu, D.-Q. Wang and C.-P. Fei (2011). "Morphologic characters of hybrid (Chinemys reevesii♀× Ocadia sinensis♂) and comparison with their parents." Journal of Nanchang University (Natural Science) 6: 012.
Hubisz, M. J., D. Falush, M. Stephens and J. K. Pritchard (2009). "Inferring weak population structure with the assistance of sample group information." Molecular Ecology Resource 9(5): 1322-1332.
Jiang, Y., L. W. Nie, Z. F. Huang, W. X. Jing, L. Wang, L. Liu and X. T. Dai (2011). "Comparison of complete mitochondrial DNA control regions among five Asian freshwater turtle species and their phylogenetic relationships." Genetic Molecular Resource 10(3): 1545-1557.
Jombart, T. (2013). A tutorial for Discriminant Analysis of Principal Components (DAPC) using adegenet 1.4-0. From http://adegenet.r-forge.r-project.org/files/tutorial-dapc.pdf
Knapp, C., M. Breuil, C. Rodrigues and J. Iverson (2014). Lesser Antillean Iguana, Iguana delicatissima: Conservation Action Plan, 2014—2016, by: IUCN, Gland, Switzerland.
Kulikova, I. V., Y. N. Zhuravlev, K. G. McCracken and D. Haukos (2004). "Asymmetric hybridization and sex-biased gene flow between Eastern Spot-billed Ducks (Anas zonorhyncha) and Mallards (A. platyrhynchos) in the Russian Far East." The Auk 121(3): 930-949.
Librado, P. and J. Rozas (2009). "DnaSP v5: a software for comprehensive analysis of DNA polymorphism data." Bioinformatics 25(11): 1451-1452.
Lin, S.-M., Y. Lee, T.-H. Chen and J.-W. Lin (2015). "Habitat Preference and Management of a Chinese Pond Turtle Population Protected by the Demilitarized Kinmen Islands." Journal of Herpetology. (In-Press)
Lockwood, J. L., M. F. Hoopes and M. P. Marchetti (2013). Invasion ecology, Blackwell, Oxford, UK.
Liu L., L.-W. Nie, X.-J. Bu, X.-Q. Xia, Z.-F. Huang and W.-X. Jing (2012). "Isolation and characterization of ten novel polymorphic microsatellites loci in the Chinese pond turtle (Mauremys reevesii) and cross-species amplification in other Cryptodira species." Anhui Normal University Master Thesis, Anhui, China.
Mank, J. E., J. E. Carlson and M. C. Brittingham (2004). "A century of hybridization: decreasing genetic distance between American black ducks and mallards." Conservation Genetics 5(3): 395-403.
Otani, T. (1995). "A possible hybrid between Geoemyda japonica and Cuora flavomarginata obtained in captivity." Akamata 11: 22-24.
Parham, J. F., T. J. Papenfuss, P. P. Dijk, B. S. Wilson, C. Marte, L. R. Schettino and W. Brian Simison (2013). "Genetic introgression and hybridization in Antillean freshwater turtles (Trachemys) revealed by coalescent analyses of mitochondrial and cloned nuclear markers." Molecular Phylogenetics and Evolution 67(1): 176-187.
Poulakakis, N., S. Glaberman, M. Russello, L. B. Beheregaray, C. Ciofi, J. R. Powell and A. Caccone (2008). "Historical DNA analysis reveals living descendants of an extinct species of Galapagos tortoise." Proceedings of the National Academy of Sciences of the United States of America 105(40): 15464-15469.
Rhodin, A., J. Parham, P. Van Dijk and J. Iverson (2009). "Turtles of the world: annotated checklist of taxonomy and synonymy, 2009 update, with conservation status summary." Conservation biology of freshwater turtles and tortoises: A compilation project of the IUCN/SSC Tortoise and Freshwater Turtle Specialist Group. Chelonian Research Monographs (5): 000.39-000.84.
Rhymer, J. M. and D. Simberloff (1996). "Extinction by hybridization and introgression." Annual Review of Ecology and Systematics: 83-109.
Shi, H., J. F. Parham, W. B. Simison, J. Wang, S. Gong and B. Fu (2005). "A report on the hybridization between two species of threatened Asian box turtles (Testudines: Cuora) in the wild on Hainan Island (China) with comments on the origin of'serrata'-like turtles." Amphibia-Reptilia 26(3): 377.
Spinks, P. Q., H. B. Shaffer, J. B. Iverson and W. P. McCord (2004). "Phylogenetic hypotheses for the turtle family Geoemydidae." Molecular Phylogenetics and Evolution 32(1): 164-182.
Stuart, B. L. and J. F. Parham (2007). "Recent hybrid origin of three rare Chinese turtles." Conservation Genetics 8(1): 169-175.
Suzuki, D., H. Ota, H.-S. Oh and T. Hikida (2011). "Origin of Japanese Populations of Reeves' Pond Turtle, Mauremys reevesii (Reptilia: Geoemydidae), as Inferred by a Molecular Approach." Chelonian Conservation and Biology 10(2): 237-249.
Tamura, K., G. Stecher, D. Peterson, A. Filipski and S. Kumar (2013). "MEGA6: Molecular Evolutionary Genetics Analysis version 6.0." Mol Biol Evol 30(12): 2725-2729.
Van Oosterhout, C., W. F. Hutchinson, D. P. Wills and P. Shipley (2004). "MICRO‐CHECKER: software for identifying and correcting genotyping errors in microsatellite data." Molecular Ecology Notes 4(3): 535-538.
Wilson, G. A. and B. Rannala (2003). "Bayesian inference of recent migration rates using multilocus genotypes." Genetics 163(3): 1177-1191.
Wink, M., D. Guicking and U. Fritz (2000). "Molecular evidence for hybrid origin of Mauremys iversoni (Pritchard et McCord, 1991) and Mauremys pritchardi (McCord, 1997) (Reptilia: Testudines: Bataguridae)." Zoologische Abhandlungen-Staatliches Museum Fur Tierkunde in Dresden 51(1): 41-49.
Xia, X., L. Wang, L. Nie, Z. Huang, Y. Jiang, W. Jing and L. Liu (2013). "Interspecific hybridization between Mauremys reevesii and Mauremys sinensis: Evidence from morphology and DNA sequence data." African Journal of Biotechnology 10(35): 6716-6724.
Ye, R., R. Zheng, L. Wang and W. Du (2008). "Polymorphic microsatellite loci in the Chinese pond turtle (Chinemys reevesii)." Conservation Genetics 10(4): 1045-1048.
You, C.-W., Y.-P. Lin, Y.-H. Lai, Y.-L. Chen, Y. Tang, S.-P. Chou, H.-Y. Chang, R. T. Zappalorti and S.-M. Lin (2013). "Return of the pythons: first formal records, with a special note on recovery of the Burmese python in the demilitarized Kinmen islands." Zoological Studies 52(1): 8
Zhang, Y., J. Y. Zhang and R. Q. Zheng (2010). "Isolation and characterization of 14 polymorphic microsatellite loci in the Asian yellow pond turtle, Mauremys mutica (Cantor, 1842)." Aquaculture Research 41(9): e353-e356.