研究生: |
呂長澤 |
---|---|
論文名稱: |
臺灣細辛屬杜蘅組植物之系統分類與親緣地理研究 |
指導教授: | 王震哲 |
學位類別: |
博士 Doctor |
系所名稱: |
生命科學系 Department of Life Science |
論文出版年: | 2010 |
畢業學年度: | 98 |
語文別: | 中文 |
論文頁數: | 179 |
中文關鍵詞: | 細辛屬 、杜蘅組 、形值分析 、親緣關係 、親緣地理研究 |
論文種類: | 學術論文 |
相關次數: | 點閱:187 下載:20 |
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本論文主要針對臺灣細辛屬杜蘅組 (Asarum sect. Heterotropa)植物的系統分類處理、親緣關係與親緣地理模式進行探討。
在系統分類方面,本研究利用形值分析的方法重新檢視大花細辛複合群(Asarum macranthum complex),結果顯示此複合群可區分成三個分類群,包括大屯細辛(A. taitonense)、大花細辛(A. macranthum)與其變種—罈花細辛(A. macranthum var. ampulliflorum)。而柱頭與花柱形態、花被筒內壁特徵和花被筒形狀被認為是區分臺灣產杜蘅組植物的重要特徵,根據這些特徵,可將臺灣產杜蘅組植物區分成三群:下花細辛群、大花細辛群與鴛鴦湖細辛群。然而,在nrDNA的ITS片段所建構的細辛屬植物親緣關係中,顯示臺灣產杜蘅組植物亦分為三個單系群,但是與形態的分群不一致。且發現與臺灣的種類最近緣的是產於日本琉球群島與九州及本州西南部的種類。
最後,在以臺灣杜蘅組TW支序群為對象的親緣地理研究上,發現TW支序群內各族群間遺傳結構呈現高度分化,此與其特殊之生長、傳粉與種子傳播模式有關。此外,根據巢狀支序親緣地理分析 (NCPA) 及最近共祖時間推估 (TMRCA) 的結果,推論在Bayesian skyline plot上所觀察到的族群擴張與瓶頸效應的事件,除更新世冰河期循環的作用外,可能分別導因於祖先族群入侵一新的環境,以及最近一次冰河期最大值時,極度乾冷的氣候及森林範圍退縮造成族群數量變少有關。
綜合上述研究結果。確認臺灣產杜蘅組植物共計有12個分類群,包括11種及1個變種,其中有10個種類為特有種。而根據親緣關係研究則顯示這些現生分類群的祖先可能源於中國東南部與日本之間的區域。而臺灣杜蘅組植物各分類群分化的因素,除受冰期與間冰期循環的影響外,其本身的生物特性,例如對生長環境因子的需求、繁殖與傳粉策略等,亦是主要的原因之一。
In this dissertation, I focused on the systematics, phylogeny and the process of species differentiation of Asarum section Heterotropa in Taiwan.
In the systematic study, I performed morphometric analyses to resolve the taxonomic problems in the A. macranthum complex. The results support that the complex should be treated as three taxa, A. macranthum, A. macranthum var. ampulliflorum and A. taitonense. The stigma and style morphologies, the patterns on the inner wall of perianth,
and the shape of the perianth-tube are the most important characters to identify the Taiwanese Heterotropa. Based on these characters, we divided all Taiwanese Heterotropa into three groups. However, this grouping is inconsistent with the grouping of the nrDNA ITS phylogenetic analysis. In addition, according to ITS phylogenetic tree, the closest relations of the Heterotropa species in Taiwan are with Ryukyu Islands and south Kyusyu.
Phylogeographical study on the Taiwan clade showed high
differentiation in the genetic structure among the populations in the Taiwan clade. The result may be due to the specific growth patterns, pollination mechanism and seed dispersal systems of this group. According to the results of nested clade phylogenetic analysis, time of the
most ancestor estimation and Bayesian skyline plot, I inferred the demographical history of the Taiwan clade should be resulted from populations invading a new environment and the influence of extremely VI dry and cold climate in Last Glacial Maximum.
In conclusion, I confirmed that there are twelve Heterotropa taxa in Taiwan, including 11 species and one variety, and ten of twelve are endemic. The ancestor of Heterotropa species in Taiwan originated from the area between Southeast China and Japan based on the phylogenetic
inference. In addition to the influence of Pleistocene climatic fluctuations, the main factors that affected the species differentiation of Taiwanese Heterotropa may be correlated with its biological characteristics, such as
the growth patterns, pollination mechanism and seed dispersal systems in this group.
Aoki, K., T. Matsumura, T. Hattori, and N. Murakami. 2006. Chloroplast DNA phylogeography of Photinia glabra (Rosaceae) in Japan. Amer. J. Bot. 93: 1852-1858.
Araki, Y. 1937. The species of Asarum in the Santan District. Acta Phytotax. Geobot. 6: 122-135.
Araki, Y. 1953. Systema generis Asari. Acta Phytotax. Geobot. 15: 33-36.
Avise, J. C. 2000. Phylogeography: The history and formation of species. Harvard University Press, Cambridge, Massachusetts, USA.
Cain, M. L., H. Damman & A. Muir. 1998. Seed dispersals and the Holocene migrate of woodland herbs. Ecological Monographs 68: 325-347.
Cheng, C.-Y. & C.-S. Yang. 1983. A synopsis of the Chinese species of Asarum (Aristolochiaceae). J. Arnold Arb. 64: 565-597.
Cheng, C.-Y. & C.-S. Yang. 1988. Asarum. In H.-S. Kiu & Y.-R. Ling (eds.), Fl. Reip. Pop. Sin. 24: 161-196. Science Press.
Comes, H. P. and J. W. Kadereit. 1998. The effect of Quaternary climatic changes on plant distribution and evolution. Trends in Plant Science 3: 432-438.
Coyne, J. A. and H. A. Orr. 2004. Speciation. Sinauer Associates, Inc. Sunderland, Massachusetts, USA.
Da Costa, A.F., P.J.F. Pena Rodrigues and M.D.G. Lapa Wanderley. 2009. Morphometric analysis and taxonomic revision of the Vriesea paraibica complex (Bromeliaceae). Bot. J. Linn. Soc. 159: 163-181.
De Faria, A.P.G., T. Wendt and G.K. Brown. 2010. A revision of Aechmea subgenus Macrochordion (Bromeliaceae) based on phenetic analyses of morphological variation. Bot. J. Linn. Soc. 162: 1-27.
Drummond, A. J. and A. Rambaut. 2007. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 7:214.
Excoffier, L., G. Laval and S. Schneider. 2005. Arlequin ver. 3.0: An integrated software package for population genetics data analysis. Evol. Bioinform. Online 1:47-50.
Frajman, B. and B. Oxelman. 2007. Reticulate phylogenetics and phytogeographical structure of Heliosperma (Sileneae, Caryophyllaceae) inferred from chloroplast and nuclear DNA sequences. Mol. Phylogenet. Evol. 43: 140-155.
Fu, Y. X. 1997. Statistical neutrality of mutations against population growth, hitchhiking and background selection. Genetics 147: 915-925.
Hall, T. A. 1999. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41: 95-98.
Hayata, B. 1915. Icones Plantanum Formosanarum, Vol.V. Bureau of Forestry. Taihoku (Taipei). Taiwan, pp. 139-150.
Henderson, A. 2006. Traditional morphometrics in plant systematics and its role in palm systematics. Bot. J. Linn. Soc. 151: 103-111.
Henderson, J. A. 2004. A multivariate analysis of Hyospathe (Palmae). Amer. J. Bot. 91: 953-965.
Heulsenbeck, J. P. & F. Ronquist. 2001. MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755.
Hewitt, G. M. 2000. The genetic legacy of the Quaternary ice ages. Nature 405: 907-913.
Hewitt, G. M. 2004. Genetic consequences of climatic oscillations in the Quaternary. Phil. Trans. R. Soc. B. 359: 183-195.
Hong-Wa, C. 2008. Multivariate analyses of morphological characters of Leptolaena Thouars s.l. subgenera Mediusella and Xerochlamys (Sarcolaenaceae). Bot. J. Linn. Soc. 157: 559-574.
Hooker, J.D. 1888. Asarum macranthum. Curtis’ Bot. Mag. t. 7022.
Huang, S.-F. 1996. Asarum. In T.-C. Huang et al. (eds.), Fl. Taiwan 2nd edn. Vol. 2. Editorial Committee, Dept. Bot., NTU, Taipei, Taiwan, pp. 642-651.
Huang, S.-F., T.-H. Hsieh, and T.-C. Huang. 1995. Notes on the Flora of Taiwan (21) - The genus Asarum L. (Aristolochiaceae). Taiwania 40: 91-120.
Huang, S.-M., L. M. Kelly & M. G. Gilbert. 2003. Asarum. In: Wu Z.-Y., Raven P. H., editors. Flora of China, vol. 5. Beijing: Science Press, St. Louis: Missouri Botanical Garden Press. pp 246-258.
Iwanaga, M. and Y. Momotani. 1976. Inter- and intrapopulational variations in the peroxidase isozyme of Asarum nipponicum F. Maekawa. Bot. Mag. Tokyo 89: 93-98.
Jakob, S. S. and F. R. Blattner. 2006. A chloroplast genealogy of Hordeum (Poaceae): Long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference. Mol. Biol. Evol. 23: 1602-1612.
Johnson, L. A. and D. E. Soltis. 1994. MatK DNA sequences and phylogenetic reconstruction in Saxifragaceae s. str. Syst. Bot. 19: 143-156.
Kay, K. M., J. B. Whittall and S. A. Hodges. 2006. A survey of nuclear ribosomal internal transcribed spacer substitution rates across angiosperms: an approximate molecular clock with life history effects. BMC Evol. Biol. 6: 36.
Kelly, L. M. 1997. A cladistic analysis of Asarum (Aristolochiaceae) and implications for the evolution of herkogamy. Amer. J. Bot. 84: 1752-1765.
Kelly, L. M. 1998. Phylogenetic relationships in Asarum (Aristolochiaceae) based on morphology and ITS sequences. Amer. J. Bot. 85: 1454-1467.
Kelly, L. M. 2001. Taxonomy of Asarum section Asarum (Aristolochiaceae). Syst. Bot. 26: 17-53.
Kimura, M. 2000. Paleogeography of the Ryukyu islands. Tropics 10: 5-24.
Lai, M.-J. 1973. Revision of Rafflesiaceae, Balanophoraceae and Aristolochiaceae in Taiwan. Master’s thesis, Department of Forestry, National Taiwan University, Taipei, Taiwan.
Librado, P. and J. Rozas. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
Liu, T.-S. and M.-J. Lai. 1976. Aristolochiaceae. In H. L. Li et al. (eds.), Flora of Taiwan. Vol. 2. Epoch Pub. Co. Taipei, pp. 571-581.
Löhne, C. and T. Borsch. 2005. Phylogenetic utility and molecular evolution of the petD group II intron in basal angiosperms. Mol. Biol. Evol. 22: 317-332.
Lu, C.-T. 2001. A taxonomic study of Asarum L. (Aristolochiaceae) of Taiwan. Master’s thesis, National Taiwan Normal University, Taipei, Taiwan.
Lu, C.-T. and J.-C. Wang. 2009. Three new species of Asarum (section Heterotropa) from Taiwan. Bot. Std. 50: 229-240.
Lu, C.-T., C.-W. Chen and J.-C. Wang. 2009. Asarum yaeyamense Hatusima (Aristolochiaceae) newly found from northern Taiwan. Taiwan J. For. Sci. 24: 149-157.
Lu, C.-T., W.-L. Chou, S.-C. Liu and J.-C. Wang. 2010. Asarum satsumense (Aristolochiaceae), a new recorded species in Taiwan. Taiwania (accepted).
Ma, S. J. 1990. The geographical distribution and the system of Aristolochiaceae. Acta Phtotax. Sin. 28: 345-355.
Maddison, W. P. and D. R. Maddison. 2009. Mesquite: a modular system for evolutionary analysis. Version 2.72. http://mesquiteproject.org.
Maekawa, F. 1933. Japanese Asaraceae I-VII. J. Jap. Bot. 9: 39-46, 96-103, 174-181, 241-246, 281-285, 364-370, 505-512. [in Japanese]
Maekawa, F. 1934. Japanese Asaraceae VIII-IIX. J. Jap. Bot. 10: 358-362. [in Japanese]
Maekawa, F. 1936. Japanese Asaraceae. IX. J. Jap. Bot. 12: 28-34. [in Japanese]
Maekawa, F. 1952. Species-differentiation in North-western Kiusiu of Japan. J. Jap. Bot. 27: 1-6. [in Japanese]
Maekawa, F. 1963. Reduction in chromosomes and major polyploidy: their bearing on plant evolution. J. Fac. Sci. Univ. Tokyo, III, 8: 377-398.
Maekawa, F. 1978. Notes on Asarum and Heterotropa from Taiwan. J. Jap. Bot. 53: 289-299. [in Japanese]
Möller, M., L. M. Gao, R. R. Mill, D. Z. Li, M. L. Hollingsworth, M. Gibby. 2007. Morphometric analysis of the Taxus wallichiana complex (Taxaceae) based on herbarium material. Bot. J. Linn. Soc. 155: 307-335.
Okuyama, Y., N. Fujii, M. Wakabayashi, A. Kawakita, M. Ito, M. Wata-nabe, N. Murakami and M. Kato. 2005. Nonuniform concerted evolution and chloroplast capture: heterogeneity of observed introgression patterns in three molecular data partition phylogenies of Asian Mitella (Saxifragaceae). Mol. Biol. Evol. 22: 285-296.
Otieno, D. F., K. Balkwill and A. J. Paton. 2006. A multivariate analysis of morphological variation in the Hemizygia bracteosa complex (Lamiaceae, Ocimeae). Pl. Syst. Evol. 261: 19-38.
Padgett, J. E. 2004. Biogeographical, ecological, morphological, and micromorphological analyses of the species in the Hexastylis heterophylla complex. Master’s thesis, Appalachian State University, USA.
Roché, C. T. & F. A. Lang. 2008. Green-flowered Wild Ginger (Asarum wagneri Lu & Mesler). Kalmiopsis 15: 15-20.
Pedersen, H Ǽ. Species delimilation and recognition in the Brachycorythis helferi complex (Orchidaceae) resolved by multivariate morphometeric analysis. Bot. J. Linn. Soc. 162: 64-76.
Petit, R. J., I. Aguinagalde, J.-L. D. Beaulieu, C. Bittkau, S. Brewer, R. Cheddadi, R. Ennos, S. Fineschi, D. Grivet, M. Lascoux, A. Mohanty, G. Müller-Starck, B. Demesure-Musch, A. Palmé, J. P. Martin, S. Rendell and G. G. Vendramin. 2003. Glacial refugia: Hotspots but not melting pots of genetic diversity. Science 300: 1563-1565.
Posada, D., K. A. Crandall and A. R. Templeton. 2000. GeoDis: a program for the cladistic nested analysis of the geographical distribution of genetic haplotypes. Mol. Ecol. 9: 487-488.
Rogers, A. R. and H. C. Harpending. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Mol. Biol. Evol. 9: 552-569.
SAS Institute Inc. 2002. JMP version 5.0.1. http://www.jmp.com.
Shen, C.-F. 1997. The Biogeography of Taiwan: 2. Some preliminary thoughts and studies. Ann. Taiwan Mus. 40: 361-450. (in Chinese with English summary)
Sibuet, J. C. and S. K. Hsu. 2004. How was Taiwan created? Tectonophysics 379: 159-181.
Slatkin, M. and R. R. Hudson. 1991. Pairwise comparison of mitochondrial DNA sequences in stable and exponentially growing populations. Genetics 129: 555-562.
Su, H.-J. 1985. Studies on the climate and vegetation types of the Natural forests in Taiwan (Ⅲ): A sheme of geographical climate regions. Quart. J. Chin. Forest 18(3): 33-44.
Sugawara, T. 1981. Taxonomic studies of Asarum sensu lato I. karyotype and c-banding pattern in Asarum s. str., Asiasarum and Heterotropa. Bot. Mag. Tokyo 94: 225-238.
Sugawara, T. 1988. Flora biology of Heterotropa tamaensis (Aristolochiaceae) in Japan. Pl. Sp. Biol. 3:7-12.
Sugawara, T. 1992. A taxonomic study of Heterotropa nipponica and H. savatieri ssp. pseudosavatieri (Aristolochiaceae) in the Shima Peninsula. Acta Phytotax. Geobot. 43: 15-26.
Sugawara, T. 1996. Chapter 9 Kanaoi. In Y. Wakanabe ed. Monograph of Luchdorfia Butterflies. Hokkaido University Press, Sapporo. pp. 172-181. [in Japanese]
Sugawara, T. 1998. A taxonomic study of Asarum megacalyx F. Maek. and related taxa (Aristolochiaceae) distributed in Niigata Prefecture and adjacent area of Japan. Acta Phytotax. Geobot. 49: 1-17.
Sugawara, T. 2003. Morphological and cytological variation in Asarum fauriei (Aristolochiaceae) in central and north Honshu, Japan. Acta Phytotax. Geobot. 54: 149-162.
Sugawara, T. 2006. Asarum. In: Iwatsuki K., et al., editors. Flora of Japan, vol. IIa. Kodansha. p 380.
Sugawara, T. and M. Ogisu. 1992. Karyomorphology of 11 species of Asarum (Aristolochiaceae) from Taiwan and mainland China. Acta Phytotax. Geobot. 43:89-96.
Sugawara, T., N. Fujii, K. Senni, and J. Murata. 2005. Morphological and karyological characteristics and phylogenetic relationship of Asarum cordifolium C. E. C. Fisch. (Aristolochiaceae) occurring in Myanmar. Acta Phytotax. Geobot. 56, 247-255.
Swofford, D. L. 2002. PAUP*4.0b10: phylogenetic analysis using pasimony (* and other methods), v. 4.0b10. Sinauer, Sunderland, Massachusetts, USA.
Taberlet, P., L. Gielly, G. Patou and J. Bouvet. 1991. Universal primers for amplification of three noncoding regions of chloroplast DNA. Pl. Mol. Biol. 17: 1105-1109.
Takasu, H. and S. Kawano, 2009. Life-history monographs of Japanese plants. 12: Asarum caulescens Maxim. (Aristolochiaceae). Pl. Sp. Biol. 24: 61-67.
Tamura, K., J. Dudley, M. Nei and S. Kumar. 2007. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24:1596-1599.
Templeton, A. R. 1998. Nested clade analyses of phylogeographic data: testing hypotheses about gene flow and population history. Mol. Ecol. 7: 381-397.
Templeton, A. R. 2004. Statistical phylogeography: methods of evaluating and minimizing inference error. Mol. Ecol. 13: 789-809.
Templeton, A. R. and C. F. Sing. 1993. A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping. IV. Nested analyses with cladogram uncertainty and recombination. Genetics 134: 659-669.
Templeton, A. R., E. Routman and C. A. Philips. 1995. Separating population structure from population history: a cladistic analysis of the geographical distribution of mitochondrial DNA haplotypes in the tiger salamander, Ambystoma tigrinum. Genetics 140: 767-782.
Teng, L. S. 2007. Quaternary tectonics of Taiwan. Special publication of the central geographical survey. 18: 1-24.
Tougard, C., E. Renvoisé, A. Petitjean and J. P. Quéré. 2008. New insight into the colonization process of common voles: inferences from molecular and fossil evidence. PLoS ONE 3: e3532.
Watanabe K., T. Ohi-Toma, and J. Murata. 2008. Multiple in the Aristolochia kaempferi group (Aristolochiaceae): Evidence from reproductive isolation and molecular phylogeny. Amer. J. Bot. 95: 885-896.
Watanabe, K., T. Kajita, and J. Murata. 2006. Chloroplast DNA variation and geographical structure of the Aristolochia kaempferi group (Aristolochiaceae). Amer. J. Bot. 93: 442-453.
Whittemore, A. T. & T. T. Gaddy. 1997. Hexastylis. In Flora of North America. Vol. 3. http://www.efloras.org/florataxon.aspx?flora_id =1&taxon_id=115416.
Wu, C. M., C. Y. Huang, H. F. Chou, L. L. Tsai, and C. Na. 1974. Pharmacological study on Korean Asarum and Taiwanese Heterotropa. J. Taipei Med. Coll. 6: 1-46.
Yamaji, H., J. Yokoyama, H. Ohashi and M. Maki. 2006. Concordant clines and significant correlation between floral and pollen characters in Asarum heterotropoides var. heterotropoides (Aristolochiaceae). Pl. Syst. Evol. 259: 1-17.
Yamaji, H., T. Fukuda, J. Yokoyama, J.-H. Pak, C.-Z. Zhou, C.-S. Yang, K. Kondo, T. Morota, S. Takeda, H. Sasaki and M. Maki. 2007a. Reticulate evolution and phylogeography in Asarum sect. Asiasarum (Aristolochiaceae) documented in internal transcribed spacer sequences (ITS) of nuclear ribosomal DNA. Mol. Phylogenet. Evol. 863-884.
Yamaji, H., T. Nakamura, J. Yokoyama, K. Kondo, T. Morota, S. Takeda, H. Sasaki and M. Maki. 2007b. Morphological comparison of Asarum sect. Asiasarum (Aristolochiaceae) in Japan with special reference to multivariate analyses of flowers. J. Jap. Bot. 82: 57-78.
Yamane, K., K. Yano and T. Kawahara. 2006. Pattern and rate of indel evolution inferred from whole chloroplast intergenic region in sugarcane, maize and rice. DNA Res. 13: 197-204.
Yinger, B. 1983. A horticulture monograph of genus Asarum sensu lato, in Japan. Master’s thesis, University of Delaware. Newark, DE.
Yuasa, H. and F. Maekawa. 1976. Chromosomes of Asarum and Heterotropa (Aristolochiaceae) in the Ryukyu Islands. La Kromosomo II: 8-18.