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研究生: 李亞翰
Li, Ya-Han
論文名稱: 提升枯草桿菌脂肪酶的催化活性與改變其受質特異性
Improving the catalytic activity and altering the substrate specificity of Bacillus subtilis Lipase
指導教授: 李冠群
Lee, Guan-Chiun
學位類別: 碩士
Master
系所名稱: 生命科學系
Department of Life Science
論文出版年: 2015
畢業學年度: 103
語文別: 中文
論文頁數: 118
中文關鍵詞: 枯草桿菌脂肪酶Archaeoglobus fulgidus 脂肪酶
英文關鍵詞: Bacillus subtilis Lipase, Archaeoglobus fulgidus Lipase
DOI URL: https://doi.org/10.6345/NTNU202205429
論文種類: 學術論文
相關次數: 點閱:150下載:18
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  • Bacillus subtilis脂肪酶(B. subtilis lipase, BSL)已經被應用在食品、洗滌劑、皮革和廢油處理等方面。成熟具活性的BSL (mature BSL, mBSL)蛋白分子是由181個胺基酸組成,是目前已知分子量最小的脂肪酶,在pH 10具有最佳活性,屬於嗜鹼性脂肪酶,但最適作用溫度為35℃,耐熱性較差,在受質特異性方面,則對含短、中碳鏈脂肪酸受質有較高的催化活性。另一種嗜高溫古生菌Archaeoglobus fulgidus脂肪酶(AFL)具有嗜熱與嗜鹼的特性,最適作用條件分別為,pH值為10.0、溫度為90℃。BSL與AFL的X-ray結晶立體結構已經被解出,AFL的 C-端區域具獨特的功能,對於長碳鏈受質的結合及穩定酵素結構扮演重要角色,而mBSL與AFL的N-端區域具有相似結構。為了提升mBSL的耐熱特性,並改變其受質特異性,本研究藉由overlap PCR將mBSL與AFL的C-端區域基因融合,以獲得融合酵素mBSL-cAFL,同時亦配合電腦模擬針對融合酵素進行蛋白質工程。重組融合酵素於E. coli中表達和純化,經過性質分析後,發現突變株 mBSL-cAFL(181+239)在高溫下(50℃)對於短碳鏈脂肪酸受質的水解活性,較mBSL提升約57%,顯示AFL C-端區域具有提升mBSL熱穩定性的作用;而修改mBSL與AFL的C-端區域間的連結區結構[mBSL-cAFL(175+245) and mBSL-cAFL(175+linker+245)],以及針對脂肪酸結合位所作的修飾[mBSL-cAFL(175+245)/F373A],並無法提升對中、長碳鏈脂肪酸受質的水解活性;針對催化三元體中的Asp133所製作的突變株mBSL-cAFL(175+245)/D133A和mBSL-cAFL(175+245)/D133E,顯示融合酵素在高溫下可能是以具有催化二元體的形式來進行催化作用。為了擴展BSL的工業用途,需要進行更多的蛋白質工程,以便進一步提升其熱穩定性、與改變其受質特異性成為適合催化長碳鏈脂肪酸受質的脂肪酶。

    關鍵字:枯草桿菌脂肪酶、Archaeoglobus fulgidus 脂肪酶

    B. subtilis lipase (BSL) has been used in the fields of food, laundry, leather, and waste oil processing, etc. Mature form of BSL (mBSL), as the smallest lipase, is composed of 181 amino acid residues. It is an alkalophilic lipase with an optimal pH of 10. However, it is not thermostable with an optimal temperature of 35℃, and only shows higher activity on glycerol ester substrates with short to medium chain-length fatty acids. Lipase from Archaeoglobus fulgidus (AFL) has been proved to be a hyperthermophilic and alkalophilic enzyme with a optimal pH and temperature of 10.0 and 90℃, respectively. The three-dimensional structures of BSL and AFL have been resolved by X-ray crystallography. The unique C-terminal domain of AFL plays an important role in long-chain substrate binding and conferring protein stability. The structure of the mBSL exhibits high similarity to the N-terminal domain of AFL. To improve the thermostability and alter the substrate specificity of mBSL, in the present study we constructed fusion genes by overlap PCR to obtain fusion enzymes which are composed of the mBSL and the C-terminal domain of AFL. The fusion enzmes were also engineered in according to the information of computer modeling. The recombinant fusion enzymes were expressed and purified in E. coli. After characteristic analysis, the mBSL-cAFL(181+239) mutant increased 57% of activity toward short-chain fatty acid ester under higher temperature (50℃) when compared to mBSL. It revealed that the intramolecular interaction of the C-domain of AFL with the BSL may improve the thermostability of BSL. Changes of the linker structure between the mBSL and the C-terminal domain of AFL [mBSL-cAFL(175+245) and mBSL-cAFL(175+linker+245)] and modification of the substrate binding site [mBSL-cAFL(175+245)/F373A] did not improve the activities toward medium and long-chain fatty acid esters. Site-directed mutagenesis of the Asp133 of the catalytic triad [mBSL-cAFL(175+245)/D133A and mBSL-cAFL(175+245)/D133E] revealed that the fusion enzyme may act as a diad-containing lipase under higher temperature. To expand the industrial applications of BSL, more protein engineerings need to be done to improve its thermostability and alter the substrate specificity of BSL into preferrence for the substrates containing long-chain fatty acids.

    Key word:Bacillus subtilis Lipase、Archaeoglobus fulgidus Lipase

    目錄 I 圖目錄 VI 表目錄 X 摘要 XIII 英文摘要 (Abstract) XV 壹、緒論 1 一、脂肪酶 1 1. 前言 1 2. 脂肪酶之結構及作用機制 2 2.1 催化三元體 (catalytic triad) 2 2.2 含氧陰離子洞 (oxyanion hole) 2 2.3 催化機制 3 2.4 界面活化作用 (interfacial activation) 4 2.5 酵素與受質的結合 4 3. 脂肪酶在生物技術上之應用 5 二、枯草桿菌 (Bacillus subtilis) 7 三、枯草桿菌脂肪酶 (Bacillus subtilis Lipase, BSL) 7 四、Archaeoglobus fulgidus 脂肪酶 (Archaeoglobus fulgidus Lipase, AFL) 8 五、研究目的 10 貳、材料與方法 11 一、菌種與培養基 11 1. 基因選殖寄主 11 2. 基因表達寄主 11 二、融合蛋白及突變株蛋白表達載體之構築 11 1. BSL與BSL-cAFL融合蛋白表達載體建構—mBSL、pBSL-cAFL(212+239)及mBSL-cAFL(181+239) 11 2. 結構和功能最適化之mBSL-cAFL融合蛋白表達載體建構—mBSL-cAFL(175+245)、mBSL-cAFL(175+linker+245)、mBSL-cAFL(175+245)/F372A、mBSL-cAFL(175+245)/D133A、mBSL-cAFL(175+245)/D133E、mBSL-cAFL(175+245)/I135D、mBSL-cAFL(175+245)/I135E 13 三、質體與質體DNA的製備 16 1. 質體 16 2. 質體DNA的製備 16 四、質體轉型 16 1. 勝任細胞 (competent cell)的製備 16 2. E. coli 轉形作用 17 五、DNA定序分析 17 六、蛋白質的表達 18 1. BSL表達條件 18 2. BSL-cAFL表達條件 18 七、蛋白質的純化 18 1. 超音波破菌法 (sonication)與滲透壓休克純化法 (osmotic shock) 19 2. Histidine-tagged 蛋白質純化 19 2.1 親合性層析管柱製備 19 2.2 可溶性Histidine-tagged蛋白質純化 20 2.3 包涵體Histidine-tagged 蛋白質純化 20 八、蛋白質的透析 (Dialysis)、透析式摺疊 (Dialysis refolding) 20 九、蛋白質的定量 21 十、酵素生化特性分析 21 1. 酯解酶 (esterase) 活性分析 21 2. 最適作用溫度分析 22 3. 受質專一性分析 23 十一、電腦模擬預測mBSL-cAFL立體結構 23 參、結果 24 一、構築BSL-cAFL fusion於E. coli內表達並進行純化 24 1. 質體構築 24 2. 蛋白質表達 24 3. 蛋白質純化 24 二、mBSL-cAFL fusion活性分析 25 三、mBSL-cAFL fusion 之結構和功能最適化 25 1. 電腦模擬 25 2. 質體構築 27 3. 蛋白質表達 27 4. 蛋白質純化 28 5. 活性分析 28 肆、討論 30 一、構築BSL-cAFL fusion於E. coli內表達並進行純化 30 二、mBSL-cAFL fusion活性分析 30 三、mBSL-cAFL fusion 之結構和功能最適化 31 伍、參考文獻 34

    Cygler, M., Grochulski, P., Kazlauskas, R.J., Schrag, J.D., Bouthillier, F., Rubin, B., Serreqi, A.N., and Guptai, A.K. (1994) A Structural Basis for the Chiral Preferences of Lipases. J. Am. Chem. SOC. 116: 3180-3186.
    Chen,C.K.M., Lee, G.C., Ko, T.P., Guo, R.T., Huang, L.M., Liu, H.J., Ho, Y.F., Shaw, J.F., Wang, A.H.J. (2009) Structure of the Alkalohyperthermophilic Archaeoglobus fulgidus Lipase Contains a Unique C-Terminal Domain Essential for Long-Chain Substrate Binding. J. Mol. Bio. 390: 672-685.
    Sharma, D., Sharma, B. and Shukla, A.K. (2011) Biotechnological approach of microbial lipase: A review. Biotechnology 10: 23-40.
    Hasan, F.,Ali Shah A., Javed S. and Hameed A. (2010) Enzymes used in detergents: Lipases. Afr. J. Biotechnol. 9: 4836-4844.
    Grochulski, P., Li, Y., Schrag, J.D., and Cygler, M. (1994) Two conformational states of Candida rugosa lipase. Protein Sci. 3: 82-91.
    Hjorth, A., Carriere, F., Cudrey, C., Woldike, H., Boel, E., Lawson, D.M., Ferrato, F., Cambillau, C., Dodson, G.G., Thim, L., (1993) A structural domain (the lid) found in pancreatic lipases is absent in the guinea pig (phospho)lipase. Biochemistry. 32: 4702-4707.
    Houde, A., Kademi, A. and Leblanc, D. (2004) Lipases and their industrial applications: An overview. Appl. Biochem. Biotechnol. 118: 155-170.
    Ito, S.; Kobayashi, T.; Ara, K.; Ozaki, K.; Kawai, S.; Hatada, Y. (1998) Alkaline detergent enzymes from alkaliphiles: enzymatic properties, genetics, and structures. Extremophiles. 2: 185-190.
    Jaeger, K.-E. and Reetz, T. (1998) Microbial lipases form versatile tools for biotechnology. Trends. Biotechnol. 16: 396-403.
    Jinyong, Y.; Yunjun, Y. (2008) Strategies for exploiting microbial lipase resource and improving lipase biocatalyst--a review. Acta Microbiologica Sinica [Wei Sheng Wu Xue Bao] 48: 1276-1281.
    Kim, K.K., Song, H.K., Shin, D.H., Hwang, K.Y., and Suh, S.W. (1997) The crystal structure of a triacylglycerol lipase from Pseudomonas cepacia reveals a highly open conformation in the absence of a bound inhibitor. Structure. 5: 173-185.
    Lang, D.A., Mannesse, M.L., de Haas, G.H., Verheij, H.M., and Dijkstra, B.W. (1998) Structural basis of the chiral selectivity of Pseudomonas cepacia lipase. Eur. J. Biochem. 254: 333-340.
    Lesuisse, E., Schanck, K., and Colson, C. (1993) Purification and preliminary characterization of the extracellular lipase of Bacillus subtilis 168, an extremely basic pH-tolerant enzyme. Eur. J. Biochem. 216: 155-160.
    Martinez, C., De Geus, P., Lauwereys, M., Matthyssens, G., and Cambillau, C. (1992) Fusarium solani cutinase is a lipolytic enzyme with a catalytic serine accessible to solvent. Nature 356: 615-618.
    Ollis, D.L., Cheah, E., Cygler, M., Dijkstra, B., Frolow, F., Franken, S.M., Harel, M., Remington, S.J., Silman, I., and Schrag, J. (1992) The alpha/beta hydrolase fold. Protein Eng. 5: 197-211.
    Polgar, L. (1992) Structural relationship between lipases and peptidases of the prolyl oligopeptidase family. FEBS Lett. 311: 281-284.
    Pouderoyen, G.v., Eggert, T., Jaeger, K.-E., and Dijkstra, B.W. (2001) The crystal structure of Bacillus subtilis lipase: a minimal alpha/beta hydrolase fold enzyme. J. Mol. Biol. 309: 215-226.
    Salameh, M.; Wiegel, J. (2007) Lipases from extremophiles and potential for industrial applications. Adv. Appl. Microbiol. 61: 253-283.
    Schrag, J.D., Li, Y., Cygler, M., Lang, D., Burgdorf, T., Hecht, H.J., Schmid, R., Schomburg, D., Rydel, T.J., Oliver, J.D., et al. (1997) The open conformation of a Pseudomonas lipase. Structure 5: 187-202.
    Verger, R., and Haas, G.H.D. (1976) Interfacial enzyme kinetics of lipolysis. Annu Rev Biophys Bioeng. 5: 77-117.
    Zeikus, J. G.; Vieille, C.; Savchenko, A. (1998) Thermozymes: biotechnology and structure-function relationships. Extremophiles. 2: 179-183.

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