研究生: |
吳孟修 |
---|---|
論文名稱: |
澎湖地區麗紋石龍子族群遺傳結構研究 study on the population genetic structure of five-shipped blue-tailed skink (eumeces elegans) in penghu |
指導教授: | 呂光洋 |
學位類別: |
碩士 Master |
系所名稱: |
生命科學系 Department of Life Science |
論文出版年: | 2001 |
畢業學年度: | 89 |
語文別: | 中文 |
論文頁數: | 80 |
中文關鍵詞: | 澎湖 、麗紋石龍子 、族群遺傳學 、同功酵素 、島嶼生物學 、島嶼面積 |
英文關鍵詞: | penghu, eumeces elegans, population genetics, allozyme, island geography |
論文種類: | 學術論文 |
相關次數: | 點閱:191 下載:22 |
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摘要
本研究利用同功酵素(isozyme)電泳技術分析澎湖地區23個島嶼25個麗紋石龍子(Eumeces elegans)族群的遺傳結構,共241隻個體;另外在馬祖、台灣亦分別取2及6個族群做比較。總計33個族群310隻個體。
本研究共判讀了14種同功酵素,包括20個基因座(locus)52個等位基因(allele)。全部33族群(包含澎湖)及澎湖25族群的平均等位基因數(A值:mean no. of alleles per locus)分別為2.6及2.3個,多型性基因座比例(P值:precentage of loci polymorphic)分別為50%及45%,平均觀測異型合子(Ho值:mean observed heterozygosity per locus)分別為0.091及0.096,平均理論異型合子(He值:mean expected heterozygosity per locus)分別為0.191和0.177。島嶼面積分別與A值、Ho值、基因型數目(no. of genotypes)呈正相關(P<0.001,R=0.790;P<0.05,R=0.485;P<0.05,R=0.511);島嶼面積以10為底取對數後,與A值、P值、Ho值、He值、基因型數目皆呈正相關(P<0.001,R=0.756;P<0.01,R=0.666;P<0.001,R=0.776;P<0.05,R=0.720;P<0.05,R=0.563)。
澎湖25族群及台灣6族群的近親交配指數(FIS)分別為0.3337及0.3826,顯示族群內個體有近親交配的傾向;族群分化指數(FST)分別為0.1867及0.1598,顯示澎湖族群間的分化大於台灣族群;基因交流值(Nm)分別為1.089及1.314,顯示台灣族群間的基因交流較順暢。
本研究的33個族群間遺傳距離(genetic distance)最遠為0.279,遺傳相似度(genetic identity)最小者為0.757;由群叢分析(Neighbor-Joining)得到台灣區麗紋石龍子可依澎湖、馬祖、台灣分為3群。分群主要受到MPI-1*、MPI-2*、GPI*三個基因座的影響。全部族群之間的遺傳距離與地理距離呈正相關(P<0.001,R=0.604),但在澎湖族群之間或台灣的族群之間則否。
Abstract
In this study, we used electrophoretic technique to investigate the population genetic structure among 25 populations of Eumeces elegans in Penghu. Animals were collected from 23 islands of Penghu, 2 and 6 populations were collected from Marzu and Taiwan respectively for comparison. The total samples in this study are 310 individuals.
Twenty presumed gene loci resolved 52 alleles in 14 isozymes. The mean number of alleles per locus, the precentage of loci polymorphic, the mean observed and expected heterozygosity per locus of total population are A=2.6, P=50%, Ho=0.091 and He=0.191 respectively. The numbers of 25 populations in Penghu are A=2.3, P=45%, Ho=0.096 and He=0.177 respectively. The A, Ho and the number of genotypes were positively correlated with the area of islands (P<0.001, R=0.790; P<0.05, R=0.485; P<0.05, R=0.511). The A, P, Ho, He and the number of genotypes were positively correlated also with the island areas calculated depending on log10 (P<0.001, R=0.756; P<0.01, R=0.666; P<0.001, R=0.776; P<0.05, R=0.720; P<0.05, R=0.563).
The inbreeding coefficient (FIS) of Penghu and Taiwan populations is 0.3337 and 0.3826 respectively and it indicates that there is an obvious trend of intrapopulation inbreeding. The value of differentiation coefficient (FST) is 0.1867 and 0.1598 respectively and it indicates that the differentiation in Penghu is large. The mean value of gene flow (Nm) is 1.089 and 1.314 respectively and it indicates that the degree of gene flow is high.
The longest genetic distance is 0.279 and the smallest genetic identity is 0.757 among 33 populations in this study. The result from Neighbor-Joining analysis indicates that the E. elegans was differentiated into 3 groups. The 2 populations of Marzu were on the proximal branches. Six populations of Taiwan and populations of Penghu were on the other 2 groups. The differentiation influenced with MPI-1*、MPI-2*、GPI*. The genetic distance is positively correlated with geographic distance among all populations (P<0.001, R=0.604). This tendency was not observed in Penghu and Taiwan populations.
陸、參考文獻
呂光洋、吳孟修、鄭振寬 2000a 澎湖群島上的爬蟲動物。大自然,69:50-55。
呂光洋、林思民、向高世、吳孟修、賴俊祥、鄭振寬 2000b 馬祖地區兩棲爬蟲動物相調查。連江縣馬祖農業改良場。
李紹章 1960 澎湖縣誌。澎湖縣政府。
林長興 1997 澎湖玄武岩地景保育解說手冊。澎湖縣政府。
林長興 1999 文化之旅—澎湖群島地質與地史。澎湖縣立文化中心。
孫承矩 1997 台灣地區石龍子類生物地理類緣關係之初探。國立台灣師範大學生物學系碩士論文。
高 善 1997 台灣地區草蜥類生物地理類緣關係之初探。師大生物學報,35(2):107-123。
鄭謙遜 1999 澎湖海島的鳥類資源。澎湖縣政府。
Acquaah, G. 1989. Practical protein electrophoresis for genetic research. Dioscorides press. pp: 13-16, 61-75, 97-115.
Arntzen, J. W. and R. S. Thorpe. 1999. Italian crested newts (Triturus cranifex) in the basin of Geneva: distribution and genetic interactions with autochthonous species. Herpetologica, 55(4): 423-433.
Austin, C. C. 1995. Molecular and morphological evolution in south pacific Scincid lizards: morphological conservatism and phylogenetic relationships of Papuan Lipinia (Scincidae). Herpetologica, 51(3): 291-300.
Avise, J. C., J. Arnold, R. M. Ball, Jr., E. Bermingham, T. Lamb, J. E. Neigel, C. A. Reeb and N. C. Saunders. 1987. Intraspecific phylogeography: the mitochondrial DNA bridge between population genetics and systematics. Annu. Rev. Ecol. Syst. 18: 489-522.
Black, W. C. 1997. BIOSYS-2, a computer program for the analysis of allelic variation in genetics. Department of Microbiology, Colorado State University.
Brown, J. H. and M. V. Lomolino. 1998. Biogeography. Sinauer Associates, Inc. USA.
Carlin, J. L. 1997. Genetic and morphological differentiation between Eurycea longicauda longicauda and E. guttolineata (Caudate: Plethodontidae). Herpetologica, 53(2): 206-217.
Crow, J. F. and M. Kimura. 1970. An introduction to population genetics theory. Harper and Row, New York. pp: 117-191.
da Silva, N. J. Jr. and J. W. Sites, Jr. 2001. Phylogeny of south American triad coral snakes (Elapidae: Micrurus) based on molecular characters. Herpetologica, 57(1): 1-22.
Duellman, W. E. and D. M. Hillis. 1987. Marsupial frogs (Anura: Hylidae: Gastrotheca) of the Ecuadorian Andes: resolution of taxonomic problems and phylogenetic relationships. Herpetologica, 43(2): 141-173.
Fisher, R. N. 1997. Dispersal and evolution of the pacific basin gekkonid lizards Gehyra oceanica and Gehyra mutilata. Evolution, 51(3): 906-921.
Green, D. M. and C. Pustowka. 1997. Correlated morphological and allozyme variation in the hybridizing toads Bufo americanus and Bufo hemiophrys. Herpetologica, 53(2): 218-228.
Gustavo, A. L., D. J. Morafka and R. W. Murphy. 1999. The peninsular archipelago of Baja California: A thousand kilometers of tree lizard genetics. Herpetologica, 55(3): 369-381.
Highton, R. and S. B. Hedges. 1995. Geographic protein variation in Pseudacris brimleyi (Anura: Hylidae): Analysis by sequential electrophoresis. J. Herpetol., 29(3): 419-425.
Highton, R. 1997. Geographic protein variation and speciation in the Plethodon dorsalis complex. Herpetologica, 53(3): 345-356.
Highton, R. 1998a. Frequency of hybrids between introduced and native populations of the salamander Plethodon jordani in their first generation of sympatry. Herpetologica, 54(2): 143-153.
Highton, R. 1998b. Is Ensatina eschscholtzii a ring-species? Herpetologica, 54(2): 254-278.
Highton, R. 1999. Hybridization in the contact zone between Plethodon richmondi and Plethodon electromorphus in Northern Kentucky. Herpetologica, 55(1): 91-105.
Hikida, T. 1993. Phylogenetic relationships of the skinks of the Genus Eumeces (Scincidae: Reptailia) from East Asia. Jap. J. Herpetol., 15(1): 1-21.
Hikida, T. and J. Motokawa. 1993. phylogeographical relationships of the Skinks of the Genus Eumeces (Scincidae: Reptailia) from East Asia. Tropical island herpetofauna, 29: 231-247.
Huang, W. S. 1996a. Sexual size dimorphism in the five-striped blue-tailed skink, Eumeces elegans, with noted on its life history in Taiwan. Zool. Stud., 35(3): 188-194.
Huang, W. S. 1996b. The male reproductive cycle of the skink Eumeces elegans (Squamata: Scincidae) from the central high altitude area of Taiwan. Bull. Natil. Mus. Nat. Sci., 7: 99-104.
Kato, J. and H. Ota. 1994. Notes on the Breeding of the five lined skink, Eumeces elegans. Act. Zool. Taiwan., 5(1): 77-81.
Kato, J., H. Ota and T. Hikida. 1994. Biochemtry systematics of the Latiscutatus species-group of the Genus Eumeces (Scincidae: Reptailia) from East Asia. Islands. Biochem. Syst. Ecol., 22(5): 491-500.
Kimura, M. and G. H. Weiss. 1964. The stepping stone model of population structure and the decrease of genetic correlation with distance. Genetics, 49: 561-576.
Kimura, M. 1968. Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles. Genet. Res., 11: 247-269.
Kimura, M. and T. Ohta. 1971. Protein polymorphism as a phase of molecular evolution. Nature, 229: 467-469.
Lue, K. Y. and S. L. Chen. 1989. Notes on the nesting of Eumeces elegans (Lacertilia: Reptailia) near Mei-Fong, Taiwan. J. Taiwan Mus., 42(1): 79-80.
Lue, K. Y., S. L. Chen. And W. S. Chang. 1992. Notes on the reptiles collected from the offshore island of Penghu Archipelago. J. Taiwan Mus., 45(1): 15-18.
MacCulloch, R. D., J. Fu, I. S. Darevsky, F. D. Danielyan and R. W. Murphy. 1995. Allozyme variation in three closely related species of Caucasian rock lizard (Lacerta). Amphibia-Reptilia, 16: 331-340.
Matsui, M. and J. A. Wilkinson. 1992. The phylogenetic position of Rana rugosa among some common frog species in Japan. J. Herpetol., 26(1): 9-16.
Milton, D. A., J. M. Hughes and P. B. Mather. 1983. Electrophoretic evidence for the specific distinctness of Egernia modesta and E. whitii (Lacertilia: Scincidae). Herpetologica, 39(2): 100-105.
Narins, P. M., A. S. Feng, H. S. Yong and J. Christensen-Dalsgaard. 1998. Morphological, behavioral, and genetic divergence of sympatric morphotypes of the treefrog Polypedates leucomystax in Peninsular Malaysia. Herpetologica, 54(2): 129-142.
Nei, M. 1972. Genetic distance between populations. Amer. Nat., 106: 283-292.
Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proc. Nat. Acad. Sci. USA, 70(12): 3321-3323.
Nei, M. 1977. F-statistics and analysis of gene diversity in subdivided populations. Ann. Hum. Genet. (Lond.), 41: 225-233.
Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics, 89: 583-590.
Nei, M. and S. Kumar. 2000. Molecular Evolution and Phylogenetics. Oxford University Press.
Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Computer Applications in the Biosciences, 12: 357-358.
SAS Institute Inc. 1988. SAS User’s Guide: Stiatistics, Version 6 ed. Cary, North Carolina: SAS Institute Inc.
Scillitani, G. and O. Picariello. 2000. Genetic variation and its causes in the created newt, Triturus carnifex (Laurenti, 1768), from Italy (Caudata: Salamandridae). Herpetologica, 56(1): 119-130.
Slatkin, M. 1985. Rare alleles as indicayors of gene flow. Evolution, 39(1): 53-65.
Slatkin, M. 1987. Gene flow and the geographic structure of natural populations. Science, 236: 787-792.
Starr, C. and R. Taggart. 1989. Biology: the unity and diversity of life. Wadsworth publishing company. pp: 593-629.
Swofford, D. L. and R. K. Selander. 1989. BIOSYS-1, a computer program for the analysis of allelic variation in population genetics and biochemical systemation. Illinois Natural History Surevey. Universuty of Illinois. Urbana, Illinois.
Swofford, D. L., G. J. Olsen, P. J. Waddell, and D. M. Hillis. 1996. Phylogenetic inference. pp. 407-514 in Molecular Systematics, 2nd ed., ed. D. M. Hillis, C. Moritz, and B. K. Mable. Sinauer Associates, Sunderland, Massachusetts.
Thorpe, J. P. 1982. The molecular clock hypothesis: biochemical evolution, genetic differetiation and systematics. Ann. Rev.Ecol. Syst. 13: 156-162.
Toda, M., M. Nishida, M. Matsui, K. Y. Lue and H. Ota. 1998. Genetic variation in the Indian rice frog, Rana limnocharis (Amphibia: Anura), in Taiwan, as revealed by allozyme data. Herpetologica, 54(1): 73-82.
Valenzuela, N. 2001. Genetic differentiation among nesting beaches in the highly migratory giant river turtle (Podocnemis expansa) from Colombia. Herpetologica, 57(1): 48-57.
Voss, S. R., D. G. Smith, C. K. Beachy and D. G. Heckel. 1995. Allozyme variation in neighboring isolated population of the plethodontid salamander Leurognathus marmoratus. J. Herpetol., 29(3): 493-497.
Wright, S. 1931. Evolution in mendelian populations. Genetics, 16: 97-159.
Wright, S. 1943. Isolation by distance. Genetics, 28: 114-138.
Wright, S. 1946. Isolation by distance under diverse systems of mating. Genetics, 31: 39-59.
Wright, S. 1965. The interpretation of population structure F-statistics with special regard to systems of mating. Evolution, 19: 395-420.
Wright, S. 1978. Evolution and genetics of populations, Vol. 4. Variability within and among natural populations. Univ. of Chicago Press, Chicago.
Yang, R. C. 1998. Estimating hierarchical F-statistics. Evolution, 52(4): 950-956.
Yeh, F. C., R. C. Yang, T. B. J. Boyle, Z. H. Ye and J. X. Mao. 1997. POPGENE, the user-friendly shareware for population genetic analysis. Molecular Biology and Biotechnology Centre, University of Alberta, Canada.